rs49901821 SNP Detail

Summary

• ID
  rs49901821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45571712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGAGC GTAGGGTGTG
  GTGAGCGGGA CAGCAGAGGA TTCACTTGGA AGTCATGGAG GAATCAGGAT TTTACTGTAA
  GTGCTGTGGG AGGCCATTAG AATTCTCACA GCACTCTAGT CCCAGGGTTA TAGTGTGAAC
  TATCATTTAT TCTCAGAGTT AGGGGCTGTG GGTGATGAAC TAGGACTGAT GAAGTTAGGG
  Y
  TGGGGATCTG GATGATGGTG CTAGAGCTGG GTGTGATGAC CTAAGCCTGC AGGGGTGAGT
  GACCAGCTGG CTTGGGGATT GCGAGACTGG GAGCTGGGTA CCACACAGCA CAGCCTCTGC
  AGCATCCATT GGCAGTGTGA CCATAGGCGT TACTGATGAC GTCTCCACTA TTTTCCTTCA
  TCTGTAAAAG AGGGATAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149150496	ENSMUSSNP6414113	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49901821					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45571712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	678 bp proximal
Cpgi19110	CpG island 19110	1678 bp proximal
Emp3	epithelial membrane protein 3	884 bp upstream
Gm45442	predicted gene 45442	within coordinates
Odad1	outer dynein arm docking complex subunit 1	1784 bp upstream
Rr368318	regulatory region 368318	468 bp upstream
Rr368319	regulatory region 368319	688 bp upstream
Rr400324	regulatory region 400324	646 bp downstream
Rr400325	regulatory region 400325	1069 bp upstream
Rr646609	regulatory region 646609	417 bp distal
Rr646610	regulatory region 646610	within coordinates
Rr646611	regulatory region 646611	894 bp proximal
Rr646612	regulatory region 646612	1978 bp proximal
Tssr2257	transcription start site region 2257	552 bp downstream
Tssr2258	transcription start site region 2258	1821 bp downstream
Tssr66661	transcription start site region 66661	913 bp upstream
Tssr66662	transcription start site region 66662	1246 bp upstream
Tssr66663	transcription start site region 66663	1914 bp upstream
Tssr72491	transcription start site region 72491	1867 bp upstream
Tssr72492	transcription start site region 72492	1652 bp upstream
Tssr72493	transcription start site region 72493	1620 bp upstream
Tssr72494	transcription start site region 72494	1610 bp upstream
Tssr72495	transcription start site region 72495	1594 bp upstream
Tssr72496	transcription start site region 72496	1508 bp upstream
Tssr72497	transcription start site region 72497	1405 bp upstream
Tssr72498	transcription start site region 72498	1161 bp upstream
Tssr72499	transcription start site region 72499	976 bp upstream
Tssr72500	transcription start site region 72500	841 bp upstream
Tssr72501	transcription start site region 72501	900 bp downstream
Tssr72502	transcription start site region 72502	1131 bp downstream