rs49902403 SNP Detail

Summary

• ID
  rs49902403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53522562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCCCGT TCTCAGCGTC
  GCCTACAGAC CAGCCTATGA CCAGGTATGT GCTTGCCAGC TGCTGCCTCT GTCCCTCCCG
  CAGCATCCCC ACTCAGGCTG GCTCTGTGCG ATAAGGGGGC TAACACTGCT CTTCAGAGTG
  CTGCTGTCGC TTGCCAACAG GGGTGCTCAT CCAAGAGTAA GTGGGCATTC TTCCTGCACA
  Y
  ACACAGCTAA CTAAAGTCCC TGGGCCCCAG GATGCTGGGT AGCTTCTGGA GAAAAGAGGA
  AGTAAGAGAT AGCATTATTA TTATTATTCG CTGGCTTGGG AGGTTCGGGG AAACTGGGAA
  ATATCGGTTT GGGTTTCCCT GAAGACATTC AGAGCTGACT TTCAGGTTTC CTGTGGTTGT
  TTTGTTTTAT TTTTGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63284346	NES17498603	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49902403					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63284346	NES17498603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53522562 () rs orientation: forward

Symbol	Name	Function Class
Dusp5	dual specificity phosphatase 5	within coordinates
Rr549550	regulatory region 549550	968 bp distal
Rr549551	regulatory region 549551	981 bp proximal
Rr549552	regulatory region 549552	1917 bp proximal
Tssr156987	transcription start site region 156987	310 bp downstream
Tssr156988	transcription start site region 156988	292 bp downstream
Tssr156989	transcription start site region 156989	219 bp downstream
Tssr156990	transcription start site region 156990	189 bp downstream