rs49903217 SNP Detail

Summary

• ID
  rs49903217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193903619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTAACT TTCCTTATGT
  GTGTCTCCAT ATTTCTCTCT CCTCTGTCAG TCATAGATAA AACACTAATG CAGACATAAC
  CCTAGCACAG GAACCCCCTG AGGCTGTAAT AATCTCTTTC CCACCTAGCG TCCAGTCTTA
  GAGGTCAAGT CCTTATAGGG AACTTCTCGA TAGTTGCACA AGAAGCTTTG GTCTTCTCAA
  Y
  TCTTGGTTTG AGACAGGACT TGAGGAGACT TTTTTACCTG CCTTTTTTGT TGTTGTTTTT
  AAGAAAAGTA ATAATTTATA AAAGGTCACA AAACGTATAT AGTCCCACTT GTGAGTTCCC
  AAAAGAAATT ACACAATGTT TCCAGAGAGT CTGGCTTTAG GAAAGTTTTA GAAACAGGCA
  CTGTTCACTG CTGTTCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365289	NES15865122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49903217					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365289	NES15865122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193903619 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	within coordinates
Rr426624	regulatory region 426624	1580 bp proximal
Rr426625	regulatory region 426625	1811 bp proximal
Rr426626	regulatory region 426626	1844 bp proximal
Rr426627	regulatory region 426627	1970 bp proximal