rs49903829 SNP Detail

Summary

• ID
  rs49903829
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTTGT CAGTTGTGCA
  GGAAACAAGG CCTGGTCCTA GCAAACCTTA GCATATCTTC CCTTTTTATT ATAAATGGGT
  GGTTGTTTGG TTTGTTTATT TTTATAATTT TTACTGATGC TCAGTAACCA TGAAAAACTG
  TGCACATTCA TGTACTAATA GATCTGTACC TATCTATCTC TGTACGCATA TATACAGTTC
  A
  CTGTAGAAAA CCACAGCTAG CGAGCATCGC AGACTCATGC AAACCAAGTG ATCTTGTTTA
  CAGTAACCGT CAACAGTGCC AATAAGGGGT GAGGACACTA ACAGTGTAAC TGGTGACCAC
  GTGAACAGTT CCATGAATTA AATGTTTCCT GTGTTAATCA GTATTCTTAA ATTAAAAGAA
  AATGTTTATA ATGGAAATGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147829769	ENSMUSSNP1475593	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49903829					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439235 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	within coordinates
Gm7541	predicted gene 7541	1815 bp downstream
Gm9851	predicted gene 9851	153 bp upstream
Gm55031	predicted gene, 55031	1792 bp downstream
Rr511288	regulatory region 511288	1109 bp distal
Rr511289	regulatory region 511289	622 bp distal
Tssr136994	transcription start site region 136994	1950 bp downstream
Tssr136995	transcription start site region 136995	1872 bp downstream
Tssr136996	transcription start site region 136996	1856 bp downstream
Tssr136997	transcription start site region 136997	1748 bp downstream
Tssr136998	transcription start site region 136998	1560 bp downstream