rs49904499 SNP Detail

Summary

• ID
  rs49904499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41492757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTATCGCT TCCTGCCCCC
  GCCTTCCCTC CCCGCCCCAT TCTCTGTCCT ATTGAACACC TCGCCCAGCC TAGAGCTCAC
  ATTCTCCCCC TGCTCCCGAT GGCGCTCCTG GAAGCTCTGC AACTATGCTC CACTTCAAAT
  GGGTGAGTTT AAAAAACCTA TCTTACCTCC GATTCCTGCT TCCTGCTTCC CGCAAACCCC
  R
  TCTCTTAGGA TTGTTGCATG AGGCACGCTT GCCCTGGGGG AAGGCAGATG CATATTTTCC
  TCTCCGCAGT CAATCGTGCT AGTTAACAAA TGAACGGTTT GAAGAGATGT TTAATTCCAA
  TTGTAGATCG CTTCTTTTCT TTCCAAATAG AACTGGACAT TTCTGAGCTT ATTCATATTA
  TTTTCCAATT TGGTAAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386153	NES16764723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49904499					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386153	NES16764723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41492757 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	447 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	465 bp upstream
Rr677060	regulatory region 677060	1957 bp distal
Rr677061	regulatory region 677061	1473 bp distal
Rr677062	regulatory region 677062	110 bp distal
Rr677063	regulatory region 677063	within coordinates
Rr677064	regulatory region 677064	5 bp proximal
Rr677065	regulatory region 677065	221 bp proximal
Rr677066	regulatory region 677066	552 bp proximal
Rr677067	regulatory region 677067	679 bp proximal
Rr677068	regulatory region 677068	1406 bp proximal
Tssr84512	transcription start site region 84512	1792 bp downstream
Tssr84513	transcription start site region 84513	1744 bp downstream
Tssr84514	transcription start site region 84514	1569 bp downstream
Tssr84515	transcription start site region 84515	1494 bp downstream
Tssr84516	transcription start site region 84516	1470 bp downstream
Tssr84517	transcription start site region 84517	1444 bp downstream
Tssr84518	transcription start site region 84518	744 bp downstream
Tssr84519	transcription start site region 84519	709 bp downstream
Tssr84520	transcription start site region 84520	539 bp downstream
Tssr84521	transcription start site region 84521	494 bp downstream
Tssr84522	transcription start site region 84522	457 bp downstream
Tssr84523	transcription start site region 84523	361 bp downstream
Tssr84524	transcription start site region 84524	201 bp downstream
Tssr84525	transcription start site region 84525	145 bp downstream
Tssr84526	transcription start site region 84526	110 bp downstream
Tssr84527	transcription start site region 84527	539 bp upstream
Tssr84528	transcription start site region 84528	1563 bp upstream
Tssr88995	transcription start site region 88995	1938 bp upstream
Tssr88996	transcription start site region 88996	1898 bp upstream
Tssr88997	transcription start site region 88997	653 bp upstream