rs49907863 SNP Detail

Summary

• ID
  rs49907863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156564210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGGCTGGC GCTGGGGTAA TGAGGCTGTG GGGCCTCTGG
  ACCAGGGGAA CAAGGATGGT GGGGCCAGGC TGTCTGGCGA GGGGGTTGGG GGGAAAGGGC
  Y
  TTCCTGCCCT GAGGCTTCTG CTTGAGTTGC TTAAGTGTGT GGAGTGCGCC CTGGGCTGGG
  TATCCCTGCT GGTTTGGCCC TGCATGGCCT GGCACTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148081234	ENSMUSSNP6983773	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320581547	CHEV_2_156548026	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49907863					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156564210 () rs orientation: forward

Symbol	Name	Function Class
4930405A21Rik	RIKEN cDNA 4930405A21 gene	1381 bp upstream
Cpgi12557	CpG island 12557	133 bp distal
Dlgap4	DLG associated protein 4	within coordinates
Rr39793	regulatory region 39793	991 bp proximal
Rr55940	regulatory region 55940	within coordinates
Tssr21182	transcription start site region 21182	1260 bp downstream
Tssr21183	transcription start site region 21183	1235 bp downstream
Tssr21184	transcription start site region 21184	1206 bp downstream
Tssr21185	transcription start site region 21185	1196 bp downstream
Tssr21186	transcription start site region 21186	1000 bp downstream
Tssr21187	transcription start site region 21187	988 bp downstream
Tssr21188	transcription start site region 21188	955 bp downstream
Tssr21189	transcription start site region 21189	945 bp downstream
Tssr21190	transcription start site region 21190	904 bp downstream
Tssr21191	transcription start site region 21191	644 bp downstream
Tssr21192	transcription start site region 21192	610 bp downstream
Tssr21193	transcription start site region 21193	420 bp downstream
Tssr27055	transcription start site region 27055	1462 bp upstream
Tssr27056	transcription start site region 27056	97 bp downstream