rs49907971 SNP Detail

Summary

• ID
  rs49907971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103217402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGC TCGGCTCACA CTGAAGTACT
  Y
  ATTTGCCTTC ATTTAGAAAC ATTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62546688	NES17287125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49907971					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62546688	NES17287125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103217402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	1083 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Rr404259	regulatory region 404259	56 bp downstream
Tssr126949	transcription start site region 126949	142 bp upstream
Tssr126950	transcription start site region 126950	1330 bp upstream
Tssr126951	transcription start site region 126951	1401 bp upstream
Tssr126952	transcription start site region 126952	1469 bp upstream
Tssr130054	transcription start site region 130054	1995 bp upstream
Tssr130055	transcription start site region 130055	1829 bp upstream
Tssr130056	transcription start site region 130056	1395 bp upstream
Tssr130057	transcription start site region 130057	1291 bp upstream
Tssr130058	transcription start site region 130058	200 bp upstream
Tssr130059	transcription start site region 130059	169 bp upstream
Tssr130060	transcription start site region 130060	550 bp downstream
Tssr130061	transcription start site region 130061	1492 bp downstream