rs49908074 SNP Detail

Summary

• ID
  rs49908074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151351517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGTGAACCCA TTTTGTCACA GAAAACTTTT ATTTCAAAAG
  CAGAGCCATG TGAGCACATT TTACAATGAT CTGTTATAAG ACAGGAAAGT TTCACATGAA
  R
  CAAAACAAAA AAGCTGTTCC TTCACACTCT TTCAGAGTTC AAGAGTTGTG GTCGAGCTCT
  GCTTACCTTA CAACTTCAGC TCCAGGGACA TCTCTCAAGT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144728500	ENSMUSSNP1736622	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49908074					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151351517 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr378823	regulatory region 378823	1465 bp upstream
Tssr54686	transcription start site region 54686	98 bp downstream
Tssr54687	transcription start site region 54687	120 bp downstream