rs49908635 SNP Detail

Summary

• ID
  rs49908635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11367407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTGCTT TTTTTAATGT
  CAAATTTTCA TATTTTCTAC ATGACTTTTA AAATTAGATC AGATTTGAAA GATTAATCAG
  TATTTAATTG CAATTTTATA AACTACCTGA GTCCTTAAGA GAAATTTGAT AGTTATTAAG
  CATAAGTGCT TGTCTGTCTG ATCTATAGAA TTCATTATTA TAAACAAAAC AAGACACTTG
  R
  CTTAATCTGG AGTAGAGAAG CCCTGCAAAC AGCTCATATA ATTTATATGA AAGGAGTATT
  TCATGATATA ATATTTGATA AAATGTTTAT CCAGATCACA AGGTGGATGA CCAGGGTGCT
  GGTATTACAA GGATCCTGTC TGTCTTTGGA TCTGTCTGTC TGTTTTAATT TTTCATGTTT
  GTCTTCATTT CTTTCTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63647864	NES17057582	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49908635					SNP	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647864	NES17057582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11367407 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	199 bp upstream
Snx29	sorting nexin 29	Intron