rs49908716 SNP Detail

Summary

• ID
  rs49908716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGTCT TTTTATTTTT
  TAAAATTTAT TTGACATGTG TGAGTGTCTT TGTTTTGTTT GTTTTTTCGA GACAGGGTTT
  CTCTGTGTAG CCCTGGCTGT CCTGGAACTC ACTTTGTAGA TCAGGCTGGC CTCGAACTCA
  GAAATCCACC AGCCTCTGCC TCCCAAATAC TGGGATTAAG GGCATGCGCC ACCACCACCC
  R
  GCTATGTGTG AGTGTTTTAT CGGCATGTAT GTCTATGTAT TGTGGGTGTA GTGCCTAAGG
  AGGTCAGAGG AGAACATCAG ATCCTCTAGA ACAGTAGTTA CAGTCGGTTG TGGGTTGCCA
  TCTTGGCTGC TAGGAATTGA GTGCAGCTCC TCTGCGGGAG TTTTTAACTG CTGAGCCATC
  TCTCCAGCCC TGCCAGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148003984	ENSMUSSNP1223705	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320565078	CHEV_2_153606226	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49908716					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1136 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	757 bp upstream
Rr567738	regulatory region 567738	768 bp distal
Rr567739	regulatory region 567739	667 bp distal
Tssr20916	transcription start site region 20916	1255 bp downstream
Tssr20917	transcription start site region 20917	1239 bp downstream
Tssr20918	transcription start site region 20918	1211 bp downstream