rs49909021 SNP Detail

Summary

• ID
  rs49909021
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93613689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCCGCT ACAGCTACAG
  CGAAAGCTGG TTTGTTCTGG TTTCTTGGGC CACACCACCC ATCTCTGACT TCCTGGAAAC
  CCGCCAAAGC TGGGGCCACA GCATAGAGGA GGAGGAAGGC ACAGAAGGAA ATGAAGTAGA
  ATGGGGCCAA TCCACTGAAC CTGGGAGCCA GTTGCCTTCC TTGATGAGTG TCAAGGAATA
  M
  CACTCAATGC CACTGGTAAA AAGCCACATA TCTGCAGAGA TAATATATGT TCCTAAAGAC
  AGCTCACACA TAGCAAAAAC AAACGCTTGA GATGCCTTCT TAACATATCA AAGTGAACTT
  GGCTCCCAGG TTCTCCCAGA ATCCTTTGGT CTGCATGCCC TCCCCCCTCC CCTAAACTTC
  TCTAGTCCAG CTGACTGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60510877	NES16531463	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49909021					SNP	C	C	C	C	C	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60510877	NES16531463	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93613689 () rs orientation: forward

Symbol	Name	Function Class
Gm30881	predicted gene, 30881	within coordinates
Rr325602	regulatory region 325602	within coordinates
Rr325603	regulatory region 325603	1711 bp proximal
Rr370142	regulatory region 370142	109 bp downstream
Tssr142206	transcription start site region 142206	397 bp upstream