rs49909135 SNP Detail

Summary

• ID
  rs49909135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52467308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGTCT CCCTTCCTAG
  GGCACTCATC AAGATGACTC CAGGTTCCCA GACTTGTCCC TGGACTGACC TCTGTGGCTG
  ATGGGCAAAC TCAGCCTAAG GGAATCCCTC CACCTTAGGC TTTGCAGTGA TTCATCACAC
  CAATGGCTCC CCTGAGATCC ATGGTCAGAC TTGCCTGTTG TCAGTTTGTT GCTGATGAAA
  K
  AGTGGCTACC ACATCTGGCT TACTGAGCAA CCCTTCCCCA CAGGAAGTAC AAACACAACA
  TGAGCTCTTT TTTTTTTTTT TTTTTTCTAC AATCACTCAC CTTCAACTCT GTCATGTTTA
  CAACTTCTCC TCTGTGTCCC TAAGAGCAGC TTTGTTTGGC AGCTAGAGTG CTGGCTACTC
  TCCAAGGATA GAGAGCCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60733167	NES16376315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49909135					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733167	NES16376315	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52467308 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	within coordinates
Rr410861	regulatory region 410861	90 bp proximal
Rr410862	regulatory region 410862	884 bp proximal