rs49909161 SNP Detail

Summary

• ID
  rs49909161
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCGTAC ATCAATGGAA
  TCTCTGAAAA ATCTGCTAAT AGGAACATGT TGCCTGGCTG GGAAGGGCAG CCAGAGAAAT
  ATATGACAGG TAGTATGGAG CAGGAGGACA AAAGTGCCCG GCAAAATACT ATATGCCATC
  TACATATCAT TTTTAGATAG ATGATGATGA GGTGGTGGTA GTAAAATTGG TGGTAGGAAC
  M
  CACAACATAG TTCCCTCTAG GTAACAATCA GGCTGTAACT AGAGGCCATT GCTGGGAGAA
  ACACAGAGGT GATCTGAATC TTGATGTCTT AAGGCCCAGT ATAGAATGGA GAAGAGAAAG
  GAGAGGAAGG AGGGGTTGGT TGACTGGGGA ATTGGCTTAT GAAGAATATA GTATGAGAAG
  TTCCATGAAA GTCTTGGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133020628	ENSMUSSNP3193219	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49909161					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1681 bp proximal
Gm55211	predicted gene, 55211	1432 bp upstream
Gm55212	predicted gene, 55212	1943 bp upstream
Rr626833	regulatory region 626833	209 bp proximal
Rr626834	regulatory region 626834	1583 bp proximal
St7	suppression of tumorigenicity 7	1586 bp upstream
Tssr55085	transcription start site region 55085	1613 bp upstream
Tssr55086	transcription start site region 55086	1911 bp upstream
Tssr55087	transcription start site region 55087	1971 bp upstream