rs49909247 SNP Detail

Summary

• ID
  rs49909247
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26177924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTTTAAA ACTGTTTTCA
  ATTTAGGACA GGTAGAAAAT GTACAGTTAC AGGGACGTTT GCCATTTCAT GAGATGAAAT
  GGATGCTCAT GAACTAGAAG CTTAAGAATA ATATCCATGG GACAGAGCCC CTCCATTCAG
  AATTAGAATC TATGACTCAT CTGTCTGTAT TTTATCTAAA TACCATGCAA TGAACTCCCG
  M
  ATATTTTAAC TGTATAGCAA ATGAACTTTG TATTAGAAGA GAACTTCATT TTCTTTCATA
  GCATTTTGCA AAAATTCAGT CTAAACATAC CAGATGTTTC AGATTTGAGA AGATTTAAAT
  CAGAGTCTTT TAAAGTACAA GCATGGAAGC CAGGGGTGGT GGCAAACATC TTTAATCCCA
  GCATTTAGAA AGCAGAGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582681	NES16330671	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49909247					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582681	NES16330671	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26177924 () rs orientation: forward

Symbol	Name	Function Class
Gm45343	predicted gene 45343	within coordinates
Gm64237	predicted gene, 64237	within coordinates
Nsd3	nuclear receptor binding SET domain protein 3	within coordinates
Tssr76704	transcription start site region 76704	203 bp downstream