rs49911707 SNP Detail

Summary

• ID
  rs49911707
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTGACCAGCC ATTAGATACG GTAGAATACT TCTCTTAACA
  GGCAGCTCAA GGGAATAGTA TAGGGTCACA AGCAATGTTA AGTCCTGATC TACAATAAAG
  C
  CCAGTTCTTT TCTTGAGAGA AACATAATTC TGCCAAATGG GTAAGATGAC CCCAGGTAAC
  AACTATTTGA AAAAGTACAA CACTGGTGCA CTTAAAATAA T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149126474	ENSMUSSNP3138676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49911707					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	441 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411123	regulatory region 411123	1122 bp distal
Rr411124	regulatory region 411124	716 bp distal
Rr411125	regulatory region 411125	669 bp distal
Rr411126	regulatory region 411126	within coordinates
Rr411127	regulatory region 411127	656 bp proximal
Sf3b1	splicing factor 3b, subunit 1	705 bp upstream
Tssr6707	transcription start site region 6707	1810 bp downstream
Tssr6708	transcription start site region 6708	586 bp downstream
Tssr11708	transcription start site region 11708	780 bp upstream
Tssr11709	transcription start site region 11709	702 bp upstream