rs49912748 SNP Detail

Summary

• ID
  rs49912748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137382545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTGAG GGCCACCTTG
  TATTTTTCAT CTGCAAATAA GCTTGAAGGC ACAAACTATC AAATTATCAC ACACACACAC
  ACACACACAC ACACCCCTAC CTCCCACCCC CACCATACAC AATGTAGAGT TGCCCCATCC
  ACACAGCTCA GTACACAACA CACAGAAATG TCTATAAGGA ACCAGCTCCA GCTGGCCTGG
  Y
  CCTTATCTTA TAAATATTGT AAAAACTATG GGCATGAAAA TTTCTTCTAA AAAATTACCT
  AAAAGAAACA ACAAGGAATG TGTGTTCACG TTATTCAGTG CACAGCTTCA ACCAACAGCT
  CTCCTGAAGG CAAATCAACT CTTACAGAAA TGACTTGAAG AACACTGTGG GTTCTCTAAC
  TACTGAACCC CCAGGATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
ss60805581	NES16482662	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
rs49912748					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805581	NES16482662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137382545 () rs orientation: forward

Symbol	Name	Function Class
Gm70880	predicted gene, 70880	within coordinates
Rr419604	regulatory region 419604	559 bp distal