rs49913834 SNP Detail

Summary

• ID
  rs49913834
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACATAT AAAACAAATT
  TTAAATTGTA ATCATATTTA ATAATAGTGA AAACACTTAA AACAAATTTT AACTATTATC
  AGTGACATTA CACAAGGGAA CTTTTTTTTT TTTTTGGTTT TTCAAGACAG GGTTTCTCTG
  TATAGCCCTG GTTGTCCTGG AACTCACTTT GTAGATTCAG AAATCCGCCT GCCTCTGCCT
  W
  CCAAGTGCTG GGATTAAAGG TGTGTGCCAC CACGCCCGGC CTGGAACTAT TCTTTAAGAC
  CCTAAAGAAA ATGGTGAGAA GCCCATGTCT GTTATGAAGA AGAGTTGGGA TTGCAAATGT
  ATCAGGGCGG CTAACTTGTC TTCAAATGCC TTTACATGCC CTTAACTCAG TTCTTCACAG
  GGCACTTCCT CTCACTACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135864366	ENSMUSSNP6237689	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320954467	CHEV_3_127181383	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49913834					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272114 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1714 bp downstream
Gm43355	predicted gene 43355	970 bp downstream