rs49913862 SNP Detail

Summary

• ID
  rs49913862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:62533161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCCCTGG CCGCCAGAAG ATCCACATCT CAAAGAAGTG
  GGGCTTCACC AAGTTTAATG CAGATGAATT TGAAGACATG GTTGCTGAGA AGCGCCTCAT
  Y
  CCTGATGGCT GGGGTGTCAA ATATATCCCC AATCGTGGTC CTCTGGACAA GTGGAGAGCC
  CTGCATTCCT GAAGGCTTCA ATAGTTCTCT CCTATACCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61820792	NES17754134	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49913862					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61820792	NES17754134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:62533161 () rs orientation: forward

Symbol	Name	Function Class
Gm23855	predicted gene, 23855	295 bp downstream
Gm48690	predicted gene, 48690	within coordinates
Rr273197	regulatory region 273197	1640 bp proximal
Rr281523	regulatory region 281523	1561 bp distal
Rr403806	regulatory region 403806	1973 bp downstream