rs49913896 SNP Detail

Summary

• ID
  rs49913896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184268080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTCCA CTGACTCAGC
  CACTGATTCT GCTTCACACT TTCAGGTCTG ATGTAAAACT CTTGGGTGAA GCTGAGACAT
  TGCCAATCCC CCGTGAGGGG ATTTTAGCTG GACTGCTTAT TCTATGGTTT CATTTCCCTT
  GCCTTCCCAC AACATGTTGT TCCTTCCTCC TTAACTTCTT ATGTGAGCCT CACCAACTAA
  M
  GCGCACTGTT CAATCTTCTG AATACCCACT AATTCTTCCC TTTGCTAGTC TAGTGCTAAT
  CTCCCACAAT GCTTTTCACC TTAGCTCCGC CCCACCCCCA GTCCAGCCAT TCCAGCCATT
  GCACAGCTCA ACAATATTCT GCTTACTACA TCTTTCAGGG TTTCTGACAT TTGTTGGGTT
  GAATTAGACA CTCACATACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss60356050	NES15852369	PERLEGEN	MM_PANEL2	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs49913896					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60356050	NES15852369	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184268080 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	within coordinates
Rr425238	regulatory region 425238	611 bp proximal
Tssr10585	transcription start site region 10585	884 bp upstream