rs49915832 SNP Detail

Summary

• ID
  rs49915832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26840512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACATTTC CCTTGGACAC
  AGAAGGCAGC CGTGCTGACC TCATCTGTAG GCGGTGCAGA CAACTGAACC ATATACATCT
  TACAGGCAGG GGAACAGCCA GTTCTGCCCT TACATAACCA CTGGCCCAGG TTGCCACAGG
  CCATGCATTT ATCCTCCCCT CGGGCACCTC AGCCTCTTCG TGCTGTGTGG CCCTTCAGCC
  Y
  TGGCAGCTGA CCACTCCGGT TCTTCTGGCT AGGAGACAGG GAGCCATGCC TGGGAGAAGC
  CTCCCCAGGG GCGGTGAGCT CACCTGAGCC ACACCTGGGA TTTGCCTCAC TGCTGAGGTC
  ATCTCCCGGG ATTGCCAAGA ATGACCTCAT CCCATAATCC CCAAGCAGTG CGCAGATGTC
  TAGGTTTACC AGGTGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60554451	NES16568373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49915832					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554451	NES16568373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26840512 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1			Intron
				mRNA-UTR
Gm17218	predicted gene 17218			within coordinates
Rr523902	regulatory region 523902			1072 bp distal
Rr523903	regulatory region 523903			79 bp distal
Rr523904	regulatory region 523904			within coordinates
Tssr143257	transcription start site region 143257			17 bp downstream