rs49915886 SNP Detail

Summary

• ID
  rs49915886
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79897392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTTGCC TTATCGGTTG
  TAGCCAAGAA AATTCCAAAG AAAATATTAA GTGCAACAGA CACAGATGAT TTGGAAGTTG
  GGAGGAGAAG AAGAAAGCGG AAACGAAGGT ATCTTTTCCT TCGATCCCTC ACAGGTGTGA
  CTCTAGAGAC ATTACCCCTT GGCTTCACAC CACCATTTGG TAGCGGAGCA TGGTGGGATC
  S
  AAGCTTTTCA CTTTAGCCTT TGGGAAAGGA GAGGAGAGCC AGATGATGGT GCATGCATAT
  AATCCCATCA TTAGGGAAGC TGAAACAAAA AGATTACGTG TGTTCTAGAC CAGCTTGGAC
  TACAACGTGA GACCCTGCCC CCCATCAAAA ATCATATAAC TATGGGCTGA TGAGATGGCT
  CAGCTGGAGA AGAGGGCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61024256	NES16111176	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		G	C	C		C
ss322280548	CHEV_7_87392530	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49915886					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024256	NES16111176	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79897392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	839 bp distal
Gm73873	predicted gene, 73873	1146 bp upstream
Rr168083	regulatory region 168083	391 bp distal
Rr400401	regulatory region 400401	1148 bp downstream
Tssr2310	transcription start site region 2310	1280 bp downstream
Tssr67422	transcription start site region 67422	1273 bp downstream
Tssr67423	transcription start site region 67423	1215 bp downstream
Tssr67424	transcription start site region 67424	1210 bp downstream
Tssr67425	transcription start site region 67425	1188 bp downstream
Tssr67426	transcription start site region 67426	1124 bp downstream
Tssr67427	transcription start site region 67427	1065 bp downstream
Ttll13	tubulin tyrosine ligase-like family, member 13	within coordinates