rs49916504 SNP Detail

Summary

• ID
  rs49916504
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4558816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTTGTTTATT GTATGTTGTG ATGTTTGTAT GTACGTGTTG
  CAAGTGGTAA GTGGATATCC ACTGCCCCCT CCTCTACAAA TGTCCACAGT GTTTATTTTG
  K
  TTTGTTTTGA GATGGGGTCC CTAATTGAAC CTGGAGCTGG CAGTCTCAGC GAGGCTGGTT
  GGCCGGCAAG CTCCCATGCC CACTTGGATC TCCCATCTCT G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137098897	ENSMUSSNP510231	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49916504					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4558816 () rs orientation: forward

Symbol	Name	Function Class
2900045O20Rik	RIKEN cDNA 2900045O20 gene	within coordinates
Rr265385	regulatory region 265385	784 bp proximal
Rr267453	regulatory region 267453	817 bp distal
Tssr112556	transcription start site region 112556	1576 bp downstream