rs49917077 SNP Detail

Summary

• ID
  rs49917077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52209226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTATATGA ATTATACCTA TTTATAAGCC AACTGGCTTC
  ATCCCTTTAC ATAGAAGATT TTCAGGTTAG TTTCACTACA AATCAGACTT CAAGGTTTCC
  Y
  TGGCACTGTA GCTATGGCCT CCGGTTGTGA CCACTAGTCA TTGATAGCTC CATGAAAACA
  TACACACACA CACACACACA CACACACACA CACACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60261850	NES15764141	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	T	T		C	C	T	C		C
ss145758516	ENSMUSSNP4467709	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss325417413	CHEV_17_52041523	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49917077					SNP	T	C	C	C	T	C	C	C	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261850	NES15764141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52209226 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	775 bp proximal
Rr370289	regulatory region 370289	1881 bp upstream
Rr405357	regulatory region 405357	1597 bp upstream
Tssr148690	transcription start site region 148690	1722 bp downstream
Tssr148691	transcription start site region 148691	1752 bp downstream