rs49917826 SNP Detail

Summary

• ID
  rs49917826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65204476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAAACA AAACCAAAAA
  AGCCTTGGAA CTCACTTTGT AGACCAGGCT GGCCTGCAAC TCAGAAATCC ACCTGCCTCT
  GCCTCCCAAG TGCTGGGACT AAAGGCATGT GCCACCACAC CAGGCAGGCT TAAAATTCTT
  ATGCTAACTG GTATAAACAG GCATGGTAGA GATGAAGAAG TACTAGGAAA TCTTAGAGTA
  R
  TTTTATTCAA ACTTTATACA TTTATGTCAA TATCCAAACA TTTTATCATT ATGTCAAACA
  TTAAATGTTT GTAAATAACA ATTTGTAGCA AATAACTGAT TATAAAATTG CAACCACTTC
  ATCATTTCTA AAACCAAGAT AAAATTACAT AGTATCTCTC AATTGGATAC CCACTAATAC
  CTACTTAAAA CTTAATGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52441745	NES15414803	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	A	G	G	G		G	G	G	G		A
ss324072230	CHEV_12_66258689	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49917826					SNP	G	A	G	A	G	A	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441745	NES15414803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65204476 () rs orientation: forward

Symbol	Name	Function Class
Mis18bp1	MIS18 binding protein 1	within coordinates
Tssr116466	transcription start site region 116466	1501 bp downstream