rs49918131 SNP Detail

Summary

• ID
  rs49918131
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATTATT ACCTAAAAAC
  ACATAATCTT TAGAAGTCAT TACTTAGTGT TTATCTGTTG TAATGGTTGG ATATTTCCAG
  CTTTTATTGA CCATTAATAT TAACCCTTCT CAGAAAAGAA CCCAGGCTGA TAAACTTTGA
  CTTTTGGGAG ACTGTAGCTG GATGGTTTTT TCCTTTTTTT TTTTTTTTTA AAGAAAAGTA
  M
  TTCTATATTT TATCACACAC TTTTTGAGGG ATACACTAAA TTCCTTTTGT AAGTCCTTTA
  CAAAAAATAC TTCAGAATAA ATGTCATGTA CCATGCAAAT TTACTTCCAC TGTGTATAGC
  AATGTAAATA TAATAGACCT CAAGATAATA GTTATCTGCT TCTTAATGAT TCTCATTTCA
  GATCATTTTA AAATCTACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135386132	ENSMUSSNP1064595	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320812961	CHEV_3_80715373	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49918131					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1619 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1087 bp upstream
Gm65109	predicted gene, 65109	1770 bp upstream
Rr578673	regulatory region 578673	1356 bp proximal
Rr578674	regulatory region 578674	1781 bp proximal