rs49918299 SNP Detail

Summary

• ID
  rs49918299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTACT TAGAGATTTT
  CTGCAGTGCT AAAGCAACAT CTCTTATATC AAGGCACAAT GCCTAAGTGT CCAGCCCACC
  GTTTCCTATC CATCAGAGCA AAGAAGCAGA AGGATGCAGG CCCATCCTCC TTGGGCTTGT
  ACATTAGCAT TCCAAGTCCC ACTAGACCAA AATCAGGCAT TGTGCTCTGA ACCACTAAAG
  R
  AAATGAGATC AATGAAAGTT GTATCCTTTC TGTGGCTTTG CTACCTGAGG CTTCCAAAGT
  TTAGGCTTAA GGCAAACACA GTGGGTCTAG CAGGTATGTG CTTACCTCTT ATGCCATTAA
  CAATCTCAAG TTGCTAAGTG AAAGAAGGAC CCAGAATTCC ACAGCTGACT AGGTTATCAT
  GCTTAGCAAA TGAGCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146341886	ENSMUSSNP7015853	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49918299					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584362 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1008 bp upstream
Rr405932	regulatory region 405932	550 bp upstream
Rr546756	regulatory region 546756	518 bp proximal
Rr546757	regulatory region 546757	1019 bp proximal
Tssr156136	transcription start site region 156136	561 bp upstream
Tssr156137	transcription start site region 156137	965 bp upstream