rs49918452 SNP Detail

Summary

• ID
  rs49918452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55908955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGACACT AACCTTGGCT
  CGTAGTCTAG CTACTGAAAG GCCCTCACTT TCATCAGACT CTAATCAGTG CTGTGCTCTG
  GAGGGAGCCT GTGTTAGGGC CTGAGAGAAG TATACAATCT AGGCATGAAG AACAGGGGAC
  AAAGCTTTCC CAAAAAATTC TGGAGTGAGG AGCCAAGCTG CTGCCAGGCC TTCTCTATGA
  Y
  TGCAAGGGCT TGAATACAGT GAGACCAGGA CAAACGCTGC CTCCTTCTGG GTCTGAATAC
  AGACTGGCAA GAAAGTAGGA CAGGCTTCCT TGTAAGACCC GAAGTCTTCA GGCTGGATCG
  GCCTCCAGAG CTCAAAGCCT CCCGGGGTCC CCCTAGTTCC CATCAAGCCT CGCGCAGGGC
  CCCGAGGGTG TCAGCCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405532	NES17238141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49918452					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405532	NES17238141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55908955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	138 bp proximal
Gmpr2	guanosine monophosphate reductase 2	443 bp upstream
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	within coordinates
Rr492562	regulatory region 492562	within coordinates
Rr492563	regulatory region 492563	536 bp proximal
Rr492564	regulatory region 492564	616 bp proximal
Tssr125802	transcription start site region 125802	346 bp downstream
Tssr125803	transcription start site region 125803	752 bp upstream
Tssr125804	transcription start site region 125804	810 bp upstream
Tssr125805	transcription start site region 125805	873 bp upstream
Tssr128855	transcription start site region 128855	360 bp downstream
Tssr128856	transcription start site region 128856	375 bp downstream
Tssr128857	transcription start site region 128857	566 bp downstream
Tssr128858	transcription start site region 128858	638 bp downstream
Tssr128859	transcription start site region 128859	671 bp downstream
Tssr128860	transcription start site region 128860	695 bp downstream