rs49918727 SNP Detail

Summary

• ID
  rs49918727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11368454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCAGG GGAGAGCATG
  GGTTCCAGGA GTTGTGTTAT ATCTGATTTT ACTGGCTTTT GTTATTACTA GTGAGTCCAA
  ACCAAACCTG GCTCAGCAGA AAATGAGGGC ATTCTTCCCT TTTGATCGCC TCTGCACCAG
  CTGATCTTCT CACTCAGGGA GGAAGCAGAC AGACATTAGT GTGTCAGTGT GACTGTGTGG
  R
  TGTCAGCTAA AAGCACCAAG AGAGGAGAAG CAGACTTGAG CAAGGCACAC ATGGATGCAT
  ATGCATGTAG AGGCCTACGG TGGATGGTGG GAACCATCTT TGATTGCTCT TCTACCTCAG
  GCACTGAGGC AGGGTCTGAT TTGAATGCTT ATAGTCTAGT CTTAGTAGCC AGCTTGCTCT
  GGGGACCCCC TACCACAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63647837	NES17057561	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49918727					SNP	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63647837	NES17057561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11368454 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	within coordinates
Rr391334	regulatory region 391334	1159 bp upstream
Snx29	sorting nexin 29	Intron