rs49919346 SNP Detail

Summary

• ID
  rs49919346
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:3557280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CATTCGGAGT TTCAAGTGTT TTCTCATCGT TTATGGAACG
  TTGGCTTAGT CCATTAAGGG ATAGATGTCA TTTATCAACT ATGTAAATAT TTTATTGAAA
  W
  GTTTTCCTCA CATCTCTAGA AGACTCCTTC AGTCTCTGAT GTTTGCACTC ACTGTGAATA
  GTCAGGATCT CTTCCACCTT CCGTCTCTGT CTGCCTGAGC C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145941534	ENSMUSSNP7062090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49919346					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3557280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B230117O15Rik	RIKEN cDNA B230117O15 gene			1055 bp upstream
Tmem68	transmembrane protein 68			Intron
				Noncoding-Transcript-Variant