rs49919946 SNP Detail

Summary

• ID
  rs49919946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67471442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAAGTTT CCAGGACTTC
  TTCACAGACG CCTCGTGTCT CTAACGCAGG GTTCCCCGGC CTTCAGGGAT TGGGGAGGGA
  GATTTTAAAA GGGGGGAGGA TTCGAAACTT CATCCCGCAG TTCTCAGCCA GCCAAGCTGT
  CAGCAACCTC TCCTATCTGC AAAGGTGCGT ACTCCCGCCC TCCCGGGGCT GTTTTCCTTA
  R
  CTCCTTCACC ATTTCCCTTC ACAGTATATT TATTTAAACT GCACTTGAGC CTCATTCGTC
  CACACTCCGC TCTCTCCTTC CTTCATCTCG CCTCTCCTTC TAACACTTGT GGCCTTCGCA
  CGAAATGATT GCTTCCCTGG AACTCTCTGA GACTTGGTAG ACCGGTTCAG AAAGACGGAT
  GCCCTGAGGG TAGTGTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss62435910	NES17250938	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49919946					SNP	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435910	NES17250938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67471442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	1738 bp distal
Cpgi6658	CpG island 6658	140 bp distal
Cpgi6659	CpG island 6659	188 bp proximal
Cpgi6660	CpG island 6660	907 bp proximal
Ebf2	early B cell factor 2	within coordinates
Gm20675	predicted gene 20675	864 bp upstream
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	785 bp downstream
Tssr126328	transcription start site region 126328	647 bp downstream
Tssr126329	transcription start site region 126329	537 bp downstream
Tssr126330	transcription start site region 126330	83 bp downstream
Tssr126331	transcription start site region 126331	595 bp upstream
Tssr126332	transcription start site region 126332	627 bp upstream
Tssr126333	transcription start site region 126333	738 bp upstream
Tssr126334	transcription start site region 126334	802 bp upstream
Tssr126335	transcription start site region 126335	852 bp upstream