rs49920140 SNP Detail

Summary

• ID
  rs49920140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122581147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGCAG GCGGATCTCT
  GAGTTCAAGA CCAGCATAGC CTACTGAGAG AATTCCAGGA TGGCCAGGAC TACACAGAAA
  CCCTGTCTCA CATAAACAAA AAGTCCAGAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT ACAGAAGAGA GTGTAGGACC CCTCAGAACC AAAGTGAGAG GTGTTTGCAG
  R
  ACACCAGGCT TGTTACATAG TTGCTGGGTT CTGAACTCCA GTGCACAAAA TTTAGCCACA
  GTCACCTCTT ACCTGCTGAG CCTTCTCTCC AGCCTCCCTT TTAATAACTT TTATAGAAAG
  GTCCTGCTTT GCTTTACTAT TGCTGTGTCA AACAAACAAA CACAGCCTGG AGAAGAAAGG
  ACTTCTTTCA TCTTACACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss133609461	ENSMUSSNP4829436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs49920140					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122581147 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	1744 bp upstream
Gdf3	growth differentiation factor 3	1215 bp downstream
Rr399899	regulatory region 399899	1676 bp downstream
Rr399900	regulatory region 399900	within coordinates
Tssr58686	transcription start site region 58686	1483 bp downstream
Tssr62923	transcription start site region 62923	1844 bp upstream
Tssr62924	transcription start site region 62924	1788 bp upstream
Tssr62925	transcription start site region 62925	1766 bp upstream
Tssr62926	transcription start site region 62926	1076 bp upstream
Tssr62927	transcription start site region 62927	188 bp downstream