rs49920553 SNP Detail

Summary

• ID
  rs49920553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:31466837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAAATA TGAATACAAA
  GTTTCATCAG AATATCTGCA GTGGAAAGAT GACGAGGGTC AGCCTTACCT CTACCTTAGT
  CAAAGTTATA GATATTATAA CTTACTGGTT AACCCTTGAG TGAGTTATGA GTGACTGACA
  AAAACGAGAA GCCAGAATAA GCACTGCAGC ACCACATGCA AGAAAGCACT CAATCCCTCC
  Y
  GCCCCTCTTT ACAGAGAAAG ACGGTACAAA AGGTGGTTCC CCCTCCCAAC CCTTACTAAG
  AAGGGCAAAG GTCAGCTATA GACAACTTGA ACCTTTGTAG ACCTACCTAG AAAGGACCAG
  AGAAACCTCA TTATACAATG TCCCCAGGCC TTCTAAAACA GGGTCTCATA TGACCCAGTT
  GTCCCCAAAC TAGCTATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445800	ENSMUSSNP3630589	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49920553					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31466837 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	Intron
Tssr133930	transcription start site region 133930	1216 bp downstream
Tssr133931	transcription start site region 133931	1247 bp downstream
Tssr133932	transcription start site region 133932	1280 bp downstream