rs49920711 SNP Detail

Summary

• ID
  rs49920711
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62320384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC CAGCTTGAGC TGATGGAGAC
  A
  GGCTCAAAAG TGAAACCAAA AACAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136549536	ENSMUSSNP3011909	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322982297	CHEV_9_62260909	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49920711					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62320384 () rs orientation: forward

Symbol	Name	Function Class
Gm40523	predicted gene, 40523	1235 bp downstream
Rr1154	regulatory region 1154	1547 bp upstream
Rr196313	regulatory region 196313	217 bp proximal
Rr196314	regulatory region 196314	817 bp proximal
Rr201157	regulatory region 201157	583 bp distal