rs49920972 SNP Detail

Summary

• ID
  rs49920972
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGTTAG CAGTCCCGCA
  ATAACAAAGT TCTCATTGTC ACCTTTAAAC CCAGTGCCCG CAGAGCTGCT GTCAGCTGCA
  AATCAAGCAG GAGCTTGGCT AGAGGGACCC GAGGTTTTCC CCTGAGCCCT GTCACAGCCC
  AGCTCCAGGG CCTTTCCCAC AACACAAAGT GCAGCTCAAT TAGGAAGAGG GGCCATTCAT
  S
  TGACCTCAAT TCCTTGTGAT CCAAAAAGAA GCCTCTGTCC GTTTGTGCCT CCATCATAGG
  GTCCTTGAGA TGAAAACCTA AGCATCTCAA CCCGCATGGT CTGTGCACGG TGAAATGCCC
  CCTCCCCACC AGAGAGAACC CAGGATCTAG GTGTCCTAGC TCCAAGTCCT GCTGGCACGG
  CACAGGGAGG CGGGGCCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61335343	NES16943350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49920972					SNP	G	G	G	G	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61335343	NES16943350	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	101 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	219 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	within coordinates
Tssr96170	transcription start site region 96170	210 bp upstream
Tssr99735	transcription start site region 99735	1870 bp upstream
Tssr99736	transcription start site region 99736	168 bp downstream
Tssr99737	transcription start site region 99737	683 bp downstream