rs49921292 SNP Detail

Summary

• ID
  rs49921292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80039105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCGTG GGAGTTGAGG
  TGTGCCTACA AACTCCTTGG GCACTGCCCT CTCTCCTCTC TGAGCCACTC TACCAACATT
  GGACTGTCAC GGCAGCTTCT TTAACAGAAG CAGTTCGGTG TGGTTAGGAC AGGTCACGTG
  CTCGTCACGA GTGGAGTCTG TCCCTCCACC CTTGCACACC TGCCCTGAGC TGCTGTCCTG
  Y
  CTTGTAACAA AGGCTAGGAA TCCAGCAGAT GCCTGTGTCA GCATCTGCCT GAGCTGCCCC
  AAGAGAATAG CTTAGCATGT TCCCAGACGT CCCTCCTCAG TCTCATGTCA AGAGTGTCCT
  CAACAGGGCG TGTGCACTAC AGTTTTTCTG ACATTTAATG ACTGATACAC ATCTGCCCTG
  GTCCCATGCA GACAGTGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569750	NES17023038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49921292					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569750	NES17023038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80039105 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1505 bp distal
Rr308003	regulatory region 308003	1696 bp proximal
Rr310675	regulatory region 310675	1313 bp proximal
Rr314587	regulatory region 314587	705 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates