rs49921674 SNP Detail

Summary

• ID
  rs49921674
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158255675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCGACA CAGAACCCAG
  AAACTTCTGA GCTACAAGTG TATGTTTTTG TACTCTTTCC AGTTCCTATA TATTTAGGGC
  CACTATCTGG TTATGCTGTT TGTTACCTCT TGGTAAGATA ATAAAATGTG GGGCAGAGGA
  TCTCCATGTT GAAGCACAAA CTATTGTTCC AACTTGATGA CCTAAATATA ATGATGTCAT
  A
  GTATCATAAT TCTCTACAAA GATTCATGTT ACATACATAT TGATACCTCT GTAAGAAAAC
  TGTGTCACTC TGATCTGGTT TTTTTCAAAT TGTAGAAGTA GTACCAGTCA TGAGCTGTGG
  CTATCATATT TTTTGTCCCT TACAGATGGA GAAAATGAAG AAGGGGCGAG TGGCAACTTC
  TGCTGCTTCT GGGGGTCATG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134519807	ENSMUSSNP6390813	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49921674					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158255675 () rs orientation: forward

Symbol	Name	Function Class
Map7d2	MAP7 domain containing 2	within coordinates
Tssr162488	transcription start site region 162488	161 bp upstream
Tssr162489	transcription start site region 162489	188 bp upstream