rs49922072 SNP Detail

Summary

• ID
  rs49922072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG TAACCCTGCC CAGGCCTTCC
  W
  GCTTCAGCCT CCCTGTCGCT AGGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314502	NES15371719	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49922072					SNP	A	T	T	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314502	NES15371719	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4477	CpG island 4477	1461 bp distal
Gm49586	predicted gene, 49586	1322 bp downstream
Rr463713	regulatory region 463713	1985 bp distal
Rr463715	regulatory region 463715	944 bp distal
Rr463716	regulatory region 463716	1924 bp distal
Rr463717	regulatory region 463717	1436 bp distal
Tssr112932	transcription start site region 112932	1889 bp downstream
Tssr112933	transcription start site region 112933	1411 bp downstream