rs49922079 SNP Detail

Summary

• ID
  rs49922079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78947343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA TGGCAACCTG CAGCCAGATA
  W
  GGTGCTGGGG CAGCCAAGAG CTCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144761814	ENSMUSSNP3614662	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss319805039	CHEV_1_78966201	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49922079					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78947343 () rs orientation: forward

Symbol	Name	Function Class
Gm5830	predicted pseudogene 5830	1547 bp upstream
Gm29536	predicted gene 29536	within coordinates
Gm69923	predicted gene, 69923	within coordinates
Rr413808	regulatory region 413808	41 bp proximal
Tssr12431	transcription start site region 12431	1526 bp upstream