rs49923180 SNP Detail

Summary

• ID
  rs49923180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45202039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT GGCAGGTGGT CTTCACAACA
  Y
  TGACAGCTCC ACGTACTTAT ATATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077409	ENSMUSSNP6365067	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325166150	CHEV_16_45381789	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49923180					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45202039 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	459 bp downstream
Tssr4884	transcription start site region 4884	1014 bp downstream
Tssr4885	transcription start site region 4885	1051 bp downstream
Tssr4886	transcription start site region 4886	1383 bp downstream
Tssr141220	transcription start site region 141220	923 bp downstream
Tssr141221	transcription start site region 141221	946 bp downstream
Tssr141222	transcription start site region 141222	1067 bp downstream
Tssr141223	transcription start site region 141223	1080 bp downstream
Tssr141224	transcription start site region 141224	1099 bp downstream
Tssr141225	transcription start site region 141225	1123 bp downstream
Tssr141226	transcription start site region 141226	1175 bp downstream
Tssr141227	transcription start site region 141227	1229 bp downstream
Tssr141228	transcription start site region 141228	1271 bp downstream
Tssr141229	transcription start site region 141229	1287 bp downstream
Tssr141230	transcription start site region 141230	1440 bp downstream
Tssr141231	transcription start site region 141231	1534 bp downstream
Tssr141232	transcription start site region 141232	1586 bp downstream