rs49923446 SNP Detail

Summary

• ID
  rs49923446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89923277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTTCT ACACCTTGCT
  TCACTAGTTC AACTTACAAA ACTAAAATAT AAGCTGGAAG AAAGTACCAG CTTTGACTTT
  AAAACTAAAA TTTCATAGTT TAGGAAAGCT TTTCCTAGGC TTCTATAAAC TTAACACCTT
  TCCCTAAGTA ACCCTGGCAA CCATAAAGTA ATTCATCTGG ACACCATTTT CATAAAGACG
  Y
  CCTGCTTCAT ACCATTTTAA AGACTTATAT TTAAGCATTT CCCAGGCTAA GAACAGACAT
  ACTTATACCA GTTAAAGACA CAATTTTTTG TAGGAATTAA TCCAGGGCCT TATGTCTGTT
  AGTGATGAAC TCCATGACTG AGCTATAATA TCTTCTTTTT TTTTTGTTTG TTTTTTTTTG
  TTTGTTTGTT TTGAGATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423021	NES15924721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49923446					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423021	NES15924721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89923277 () rs orientation: forward

Symbol	Name	Function Class
Tssr34181	transcription start site region 34181	1538 bp upstream
Tssr34182	transcription start site region 34182	849 bp downstream
Tssr34183	transcription start site region 34183	1639 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	Intron