rs49923473 SNP Detail

Summary

• ID
  rs49923473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99452461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGTGTG TGTGTGTGTG
  TGTGTGTGTG TATGTGGATT CACACATGTC CTGGCCAGAG GACAGCTTAG GAAGCAGGTT
  CTCTCGTTTC ATCTTAGAGG TCCAAGGATC AGAGTCAAAT CATCAGATTT AGTGGCAAGA
  GGTTTTACAT TTTGAAACAT CTCCCCAGCC TGCATCATGA TTCCTTAATT TCAGGCATCA
  S
  TATGTTCCTG TAACATAATA TCTCTAACAA TATATTGCTT TATATATGTG TGTTTGTGTA
  TGTGTGTGTG TTGATTATAG AGGTTTGGGA AAAGTAACTT TATACTAGTC ATTTCAGGGA
  GACTACAAAA ATTTTATCAT CTTGGTTTTT TTTTTATCTT AATGCCTACC ATAGGCATGT
  ATTAAATGTT TGTTGAATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61443611	NES16825976	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49923473					SNP	G	G	G	G	G	G	G	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443611	NES16825976	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99452461 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	1509 bp upstream
Cpgi22196	CpG island 22196	1322 bp distal
Rr401625	regulatory region 401625	1302 bp downstream
Rr685420	regulatory region 685420	1770 bp distal
Rr685421	regulatory region 685421	1019 bp distal
Tssr91072	transcription start site region 91072	1730 bp upstream
Tssr91073	transcription start site region 91073	1497 bp upstream