rs49923659 SNP Detail

Summary

• ID
  rs49923659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67183386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AAAATTTGCC TTCTCCTGAG
  Y
  GATATCAGTC ACCCCATCAT TTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144537546	ENSMUSSNP5648964	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319761775	CHEV_1_67190801	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49923659					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67183386 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	within coordinates
Rr34361	regulatory region 34361	within coordinates
Tssr7192	transcription start site region 7192	1277 bp downstream
Tssr7193	transcription start site region 7193	572 bp upstream
Tssr7194	transcription start site region 7194	592 bp upstream
Tssr7195	transcription start site region 7195	646 bp upstream
Tssr7196	transcription start site region 7196	675 bp upstream
Tssr7197	transcription start site region 7197	766 bp upstream