rs49924068 SNP Detail

Summary

• ID
  rs49924068
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126221206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGACCA GAAATTGTCC
  TAATGTTCCC AGCTGCACAG GAGGTGGCTG GATATGTCCC TGAGAGTTGC AGCTGACCCA
  CAGCCTGCTG TGAGGCCACT GATTCCGTAA GTACCCTAGC TTCCGGTTCC ATCTAAGTGC
  AATGGGCTCC AGGCTCTACA AGCTGGGTTA GTGAGAAGGG ACAAAGGCTC AGCCCAGAGC
  W
  AGAGCAAGGG CTCTTTCCTC CCACTTTGGC TGAGTCTGAG TGTTGAGTAA TGTTTCTGCT
  TATTTCTTCC AGTATGCTCC ATCTTCTTCC TCTAATAAAA CTCTGCCCTC ACCTCAGCTT
  GGGTTAGCAA ATGGCTGGCA GCCAAGAATG GCATTCCCCG GCCTCTCTCT TCAAGCATGT
  GACTAAACTG TGAGCAGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145875093	ENSMUSSNP1269643	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49924068					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126221206 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	1212 bp downstream
Rr655536	regulatory region 655536	324 bp distal
Rr655537	regulatory region 655537	within coordinates
Rr655538	regulatory region 655538	353 bp proximal
Tssr69045	transcription start site region 69045	870 bp upstream
Tssr69046	transcription start site region 69046	1211 bp upstream
Tssr69047	transcription start site region 69047	1413 bp upstream