rs49924653 SNP Detail

Summary

• ID
  rs49924653
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88203886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TAAGTGCATG CCCAGGTGAA CTGTCAACAC ACACAAATGA
  TTCCCTCCTG TTCTCTGCAG TTAGCTCTCT GCTCCAGTCT CCACCTTAAA TCTGGACTTC
  W
  GTCTACTGCA TGTTAGGAAA GGCCGCGCCA AAAACGTGTC TCTCAGAACA ATCAACAAGA
  TGAGGGATTC ATGGCAAGCT TGCTAGGACA TAGATTTGTT A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63352203	NES17507598	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	A	A	A	A	A	A	A	A	A	A
ss144900177	ENSMUSSNP95064	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49924653					SNP	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352203	NES17507598	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88203886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	716 bp proximal
Cpgi541	CpG island 541	1983 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12872	transcription start site region 12872	1980 bp upstream
Tssr12873	transcription start site region 12873	1100 bp downstream
Tssr12874	transcription start site region 12874	1306 bp downstream
Tssr12875	transcription start site region 12875	1346 bp downstream