rs49926343 SNP Detail

Summary

• ID
  rs49926343
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGTAATAA GGGGCCGGGC AGTGGTGGCG CATGCCTGTA
  ATCCCAGCAC TTGAGAGGCA GAGGCAGGCG GATTACTGAG TTCGAGGCCA GCCTGGTCTA
  S
  AGAGTGAGTT CCAGGACAGC CAGGACTGCA CAGAGAAACC CTGTCTCAAA AAGCCAAAAC
  AAATAAACAA ACAAAAAACG TAATAAGGAC TTAAAATAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145361191	ENSMUSSNP2331304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322745688	CHEV_8_86266151	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49926343					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468881 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	1069 bp upstream
Cpgi20655	CpG island 20655	562 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr666301	regulatory region 666301	992 bp distal
Rr666302	regulatory region 666302	883 bp distal
Rr666303	regulatory region 666303	73 bp distal
Rr666304	regulatory region 666304	within coordinates
Tssr2619	transcription start site region 2619	1851 bp downstream
Tssr2620	transcription start site region 2620	955 bp downstream
Tssr2621	transcription start site region 2621	303 bp upstream
Tssr78291	transcription start site region 78291	1896 bp downstream
Tssr78292	transcription start site region 78292	1874 bp downstream
Tssr78293	transcription start site region 78293	1733 bp downstream
Tssr78294	transcription start site region 78294	1678 bp downstream
Tssr78295	transcription start site region 78295	1632 bp downstream
Tssr78296	transcription start site region 78296	1613 bp downstream
Tssr78297	transcription start site region 78297	818 bp downstream
Tssr82051	transcription start site region 82051	1820 bp upstream
Tssr82052	transcription start site region 82052	1062 bp upstream