rs49926399 SNP Detail

Summary

• ID
  rs49926399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77187583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATGGGA AAAATATCCT
  TGCCATACAT AAAAATCAAA AAAGTATGTA AGAGTCAAAG ACATGTTTAA GTTAGCAAAG
  ATTTTCCTCT TCTGTGTGCT GTCTCTTCAT TCTGGTTTCC TTTGCTGGAC AGAGAGTGTG
  TTTCCTGTGA AGTGTGTGAT AAGAAGCAGA AGAGGGTGTG GCATGGGTGA TTGAAGGGAA
  M
  CAGTCAGAGG AGAACAGAGA GCATGGGAGA GGACAACAGG ACTTCTCCCA TGGGTCCCAC
  TGGGAGCCAA GCATGGCAGC ACATATGTAT AGGGATGTCA CTACTTTGCA TGCTTACCCA
  ATAACTTAAA TCTCAGGCCA AGTGGGTAAA AAGGTGGCTC AGTGGATAAA GGGGCCTGTT
  GTTGAGCCAG ATGCACAGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136655365	ENSMUSSNP7040618	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss323012071	CHEV_9_77128108	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49926399					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77187583 () rs orientation: forward

Symbol	Name	Function Class
Gm53504	predicted gene, 53504	within coordinates
Mlip	muscular LMNA-interacting protein	within coordinates