rs49927096 SNP Detail

Summary

• ID
  rs49927096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113665728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT GTTGCAGGAT AGGAAGGTAG
  R
  AATTTATAGC CACAAATACA TATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145276733	ENSMUSSNP3144808	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49927096					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113665728 () rs orientation: forward

Symbol	Name	Function Class
Gm34471	predicted gene, 34471	within coordinates
Gm34528	predicted gene, 34528	1993 bp upstream
Gm53817	predicted gene, 53817	within coordinates
Rr278332	regulatory region 278332	943 bp proximal
Rr282402	regulatory region 282402	1329 bp distal
Rr389105	regulatory region 389105	40 bp upstream