rs49928127 SNP Detail

Summary

• ID
  rs49928127
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAACAGGC TACTCTGCAT
  CTGCAAAATA AAACCCTCGC TATAATTATA ATCTAAGACC CAATTCACTT CCGCTCGCAT
  CTCCCTACCG ACTCGAAACT TCCCTGAAGC TCTCAAAGGA CCTATTTCTA CCTGTCCCCC
  GGCTCCCATC TCGAGCCTGC ATTATTTCCT GAAATGGGAA ACCCGGACAT CGCTCCCCTC
  G
  CAAGATGAAG ACCCGGAGCC GGGATCCCCC ACACTCCGCC CGGCTCAGGC CGGCTCAGCA
  GGAGTCTCCG GGGCCGCAGC CCGGCTACTG CAGGAGGCAG GGGAAACGAC GGCGGAAGGA
  AGACGGACGA AAGGAGGGAG GCGGGGGCGG GGACCAGGCC CGGGCTACCT GCGGGTCGGA
  GCGCAGGCGG TCCGCAGTCG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146607068	ENSMUSSNP2278685	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49928127					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9702	CpG island 9702			within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1			Intron
				Noncoding-Transcript-Variant
Rr533778	regulatory region 533778			within coordinates
Rr533779	regulatory region 533779			208 bp proximal
Rr533780	regulatory region 533780			552 bp proximal
Rr533781	regulatory region 533781			568 bp proximal
Rr533782	regulatory region 533782			874 bp proximal
Tssr152429	transcription start site region 152429			501 bp downstream
Tssr152430	transcription start site region 152430			577 bp downstream
Tssr152431	transcription start site region 152431			722 bp downstream
Tssr152432	transcription start site region 152432			754 bp downstream
Tssr152433	transcription start site region 152433			799 bp downstream