rs49928696 SNP Detail

Summary

• ID
  rs49928696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118758957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT GGAGACTATG TGAGACTGTA
  Y
  AGCCCATATA TCTGGCTGTC ACTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147317318	ENSMUSSNP2954053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320472657	CHEV_2_118754212	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49928696					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118758957 () rs orientation: forward

Symbol	Name	Function Class
Chst14	carbohydrate sulfotransferase 14	mRNA-UTR
Cpgi12099	CpG island 12099	1122 bp distal
Rr563380	regulatory region 563380	1952 bp distal
Rr563381	regulatory region 563381	1156 bp distal
Tssr19592	transcription start site region 19592	1922 bp downstream
Tssr19593	transcription start site region 19593	1901 bp downstream
Tssr19594	transcription start site region 19594	1868 bp downstream