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rs49928796 SNP Detail
Summary
  • ID
    rs49928796
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:135659915 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGATTGTATA TGGTAATGAC
    ATGGCTTGGA CTACGTCGCT CCCCAGGAAT TTGTCTGACG TCAGTGTGGA GTAATTCCCA
    TGTATGGTAA AGTGTGTAAA TACGAGGCAG CTAGTGTTTC CAGACTCTGG TATTTCCAGA
    GCTGTCCAAA GCTGTGCCTG AGGAAGAAAT AGAAGGCTCA CAGCTGCAGT GCAGCCCAGC
    S
    GGCAAGCTGG TCCTCACCCC AGGGGGTCTG GGTGTTCTTC ATGTGACGGG AGGGGGGGGG
    ACCTACATGA GCTGAGTCTC TCTGAGATGT CAGCTGCGAG CAATGTATTT ACAAGGCGAA
    GGCTCTCCGT TGTTTTCTCT CTTTTAAAAA TTCATCAGAA TCATTCAGAC TTTTCTGTCC
    AACACAGGGC ACAAACAGCT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss60803914 NES16474344 PERLEGEN MM_PANEL2 f SNP C C C C C C C C G C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
FVB/NJ
KK/HlJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs49928796 SNP C C C C C C C C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60803914 NES16474344 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:135659915 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Csrp1 cysteine and glycine-rich protein 1 Intron
Noncoding-Transcript-Variant
Gm70721 predicted gene, 70721 1674 bp upstream
Rr419255 regulatory region 419255 1685 bp distal
Rr419256 regulatory region 419256 1184 bp distal
Rr419257 regulatory region 419257 within coordinates
Rr419258 regulatory region 419258 1858 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory